Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines

Roshanak Farhoodi; Bahar Akbal-Delibas; Nurit Haspel

doi:10.1109/BIBM.2015.7359866

Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines

Roshanak Farhoodi
, Bahar Akbal-Delibas
, Nurit Haspel

Computer Science

University of Massachusetts Boston

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Original language	English
Title of host publication	Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015
Editors	lng. Matthieu Schapranow, Jiayu Zhou, Xiaohua Tony Hu, Bin Ma, Sanguthevar Rajasekaran, Satoru Miyano, Illhoi Yoo, Brian Pierce, Amarda Shehu, Vijay K. Gombar, Brian Chen, Vinay Pai, Jun Huan
Publisher	Institute of Electrical and Electronics Engineers Inc.
Pages	1296-1303
Number of pages	8
ISBN (Electronic)	9781467367981
DOIs	https://doi.org/10.1109/BIBM.2015.7359866
State	Published - Dec 16 2015
Event	IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015 - Washington, United States Duration: Nov 9 2015 → Nov 12 2015

Publication series

Name	Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015

Conference

Conference	IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015
Country/Territory	United States
City	Washington
Period	11/9/15 → 11/12/15

ASJC Scopus Subject Areas

Software
Artificial Intelligence
Health Informatics
Biomedical Engineering

Keywords

machine learning
neural networks
Protein docking and refinement
RMSD prediction
scoring functions

Access to Document

10.1109/BIBM.2015.7359866

Cite this

Farhoodi, R., Akbal-Delibas, B., & Haspel, N. (2015). Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines. In L. M. Schapranow, J. Zhou, X. T. Hu, B. Ma, S. Rajasekaran, S. Miyano, I. Yoo, B. Pierce, A. Shehu, V. K. Gombar, B. Chen, V. Pai, & J. Huan (Eds.), Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015 (pp. 1296-1303). Article 7359866 (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/BIBM.2015.7359866

Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines. / Farhoodi, Roshanak; Akbal-Delibas, Bahar; Haspel, Nurit.
Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. ed. / lng. Matthieu Schapranow; Jiayu Zhou; Xiaohua Tony Hu; Bin Ma; Sanguthevar Rajasekaran; Satoru Miyano; Illhoi Yoo; Brian Pierce; Amarda Shehu; Vijay K. Gombar; Brian Chen; Vinay Pai; Jun Huan. Institute of Electrical and Electronics Engineers Inc., 2015. p. 1296-1303 7359866 (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Farhoodi, R, Akbal-Delibas, B & Haspel, N 2015, Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines. in LM Schapranow, J Zhou, XT Hu, B Ma, S Rajasekaran, S Miyano, I Yoo, B Pierce, A Shehu, VK Gombar, B Chen, V Pai & J Huan (eds), Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015., 7359866, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015, Institute of Electrical and Electronics Engineers Inc., pp. 1296-1303, IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015, Washington, United States, 11/9/15. https://doi.org/10.1109/BIBM.2015.7359866

Farhoodi R, Akbal-Delibas B, Haspel N. Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines. In Schapranow LM, Zhou J, Hu XT, Ma B, Rajasekaran S, Miyano S, Yoo I, Pierce B, Shehu A, Gombar VK, Chen B, Pai V, Huan J, editors, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc. 2015. p. 1296-1303. 7359866. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015). doi: 10.1109/BIBM.2015.7359866

Farhoodi, Roshanak ; Akbal-Delibas, Bahar ; Haspel, Nurit. / Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines. Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. editor / lng. Matthieu Schapranow ; Jiayu Zhou ; Xiaohua Tony Hu ; Bin Ma ; Sanguthevar Rajasekaran ; Satoru Miyano ; Illhoi Yoo ; Brian Pierce ; Amarda Shehu ; Vijay K. Gombar ; Brian Chen ; Vinay Pai ; Jun Huan. Institute of Electrical and Electronics Engineers Inc., 2015. pp. 1296-1303 (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

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title = "Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines",

keywords = "machine learning, neural networks, Protein docking and refinement, RMSD prediction, scoring functions",

author = "Roshanak Farhoodi and Bahar Akbal-Delibas and Nurit Haspel",

note = "Publisher Copyright: {\textcopyright} 2015 IEEE.; IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015 ; Conference date: 09-11-2015 Through 12-11-2015",

year = "2015",

month = dec,

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doi = "10.1109/BIBM.2015.7359866",

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AU - Akbal-Delibas, Bahar

AU - Haspel, Nurit

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KW - neural networks

KW - Protein docking and refinement

KW - RMSD prediction

KW - scoring functions

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SP - 1296

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BT - Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015

A2 - Schapranow, lng. Matthieu

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A2 - Ma, Bin

A2 - Rajasekaran, Sanguthevar

A2 - Miyano, Satoru

A2 - Yoo, Illhoi

A2 - Pierce, Brian

A2 - Shehu, Amarda

A2 - Gombar, Vijay K.

A2 - Chen, Brian

A2 - Pai, Vinay

A2 - Huan, Jun

PB - Institute of Electrical and Electronics Engineers Inc.

T2 - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015

Y2 - 9 November 2015 through 12 November 2015

ER -

Accurate prediction of docked protein structure similarity using neural networks and restricted Boltzmann machines

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Keywords

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