Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

Tommaso Biancalani; Gabriele Scalia; Lorenzo Buffoni; Raghav Avasthi; Ziqing Lu; Aman Sanger; Neriman Tokcan; Charles R. Vanderburg; Åsa Segerstolpe; Meng Zhang; Inbal Avraham-Davidi; Sanja Vickovic; Mor Nitzan; Sai Ma; Ayshwarya Subramanian; Michal Lipinski; Jason Buenrostro; Nik Bear Brown; Duccio Fanelli; Xiaowei Zhuang; Evan Z. Macosko; Aviv Regev

doi:10.1038/s41592-021-01264-7

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

Tommaso Biancalani
, Gabriele Scalia
, Lorenzo Buffoni
, Raghav Avasthi
, Ziqing Lu
, Aman Sanger
, Neriman Tokcan
, Charles R. Vanderburg
, Åsa Segerstolpe
, Meng Zhang
, Inbal Avraham-Davidi
, Sanja Vickovic
, Mor Nitzan
, Sai Ma
, Ayshwarya Subramanian
, Michal Lipinski
, Jason Buenrostro
, Nik Bear Brown
, Duccio Fanelli
, Xiaowei Zhuang

Evan Z. Macosko, Aviv Regev

Mathematics

Research output: Contribution to journal › Article › peer-review

Original language	English
Pages (from-to)	1352-1362
Number of pages	11
Journal	Nature Methods
Volume	18
Issue number	11
DOIs	https://doi.org/10.1038/s41592-021-01264-7
State	Published - Nov 2021

ASJC Scopus Subject Areas

Biotechnology
Biochemistry
Molecular Biology
Cell Biology

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10.1038/s41592-021-01264-7

Cite this

Biancalani, T., Scalia, G., Buffoni, L., Avasthi, R., Lu, Z., Sanger, A., Tokcan, N., Vanderburg, C. R., Segerstolpe, Å., Zhang, M., Avraham-Davidi, I., Vickovic, S., Nitzan, M., Ma, S., Subramanian, A., Lipinski, M., Buenrostro, J., Brown, N. B., Fanelli, D., ... Regev, A. (2021). Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram. Nature Methods, 18(11), 1352-1362. https://doi.org/10.1038/s41592-021-01264-7

Biancalani, T, Scalia, G, Buffoni, L, Avasthi, R, Lu, Z, Sanger, A, Tokcan, N, Vanderburg, CR, Segerstolpe, Å, Zhang, M, Avraham-Davidi, I, Vickovic, S, Nitzan, M, Ma, S, Subramanian, A, Lipinski, M, Buenrostro, J, Brown, NB, Fanelli, D, Zhuang, X, Macosko, EZ & Regev, A 2021, 'Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram', Nature Methods, vol. 18, no. 11, pp. 1352-1362. https://doi.org/10.1038/s41592-021-01264-7

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title = "Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram",

author = "Tommaso Biancalani and Gabriele Scalia and Lorenzo Buffoni and Raghav Avasthi and Ziqing Lu and Aman Sanger and Neriman Tokcan and Vanderburg, \{Charles R.\} and {\AA}sa Segerstolpe and Meng Zhang and Inbal Avraham-Davidi and Sanja Vickovic and Mor Nitzan and Sai Ma and Ayshwarya Subramanian and Michal Lipinski and Jason Buenrostro and Brown, \{Nik Bear\} and Duccio Fanelli and Xiaowei Zhuang and Macosko, \{Evan Z.\} and Aviv Regev",

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doi = "10.1038/s41592-021-01264-7",

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AU - Biancalani, Tommaso

AU - Scalia, Gabriele

AU - Buffoni, Lorenzo

AU - Avasthi, Raghav

AU - Lu, Ziqing

AU - Sanger, Aman

AU - Tokcan, Neriman

AU - Vanderburg, Charles R.

AU - Segerstolpe, Åsa

AU - Zhang, Meng

AU - Avraham-Davidi, Inbal

AU - Vickovic, Sanja

AU - Nitzan, Mor

AU - Ma, Sai

AU - Subramanian, Ayshwarya

AU - Lipinski, Michal

AU - Buenrostro, Jason

AU - Brown, Nik Bear

AU - Fanelli, Duccio

AU - Zhuang, Xiaowei

AU - Macosko, Evan Z.

AU - Regev, Aviv

PY - 2021/11

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UR - https://www.scopus.com/pages/publications/85117965279

UR - https://www.scopus.com/pages/publications/85117965279#tab=citedBy

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M3 - Article

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AN - SCOPUS:85117965279

SN - 1548-7091

VL - 18

SP - 1352

EP - 1362

JO - Nature Methods

JF - Nature Methods

IS - 11

ER -

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

ASJC Scopus Subject Areas

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