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Establishment limitation constrains the abundance of lactic acid bacteria in the Napa cabbage phyllosphere

  • Esther R. Miller
  • , Patrick J. Kearns
  • , Brittany A. Niccum
  • , Jonah O.Mara Schwartz
  • , Alexa Ornstein
  • , Benjamin E. Wolfe
  • Tufts University

Research output: Contribution to journal › Article › peer-review

Abstract

Patterns of phyllosphere diversity have become increasingly clear with high-throughput sequencing surveys, but the processes that control phyllosphere diversity are still emerging. Through a combination of lab and field experiments using Napa cabbage and lactic acid bacteria (LAB), we examined how dispersal and establishment processes shape the ecological distributions of phyllosphere bacteria. We first determined the abundance and diversity of LAB on Napa cabbage grown at three sites using both culture-based approaches and 16S rRNA gene amplicon sequencing. Across all sites, LAB made up less than 0.9% of the total bacterial community abundance. To assess whether LAB were low in abundance in the Napa cabbage phyllosphere due to a limited abundance in local species pools (source limitation), we quantified LAB in leaf and soil samples across 51 vegetable farms and gardens throughout the northeastern United States. Across all sites, LAB comprised less than 3.2% of the soil bacterial communities and less than 1.6% of phyllosphere bacterial communities. To assess whether LAB are unable to grow in the phyllosphere even if they dispersed at high rates (establishment limitation), we used a gnotobiotic Napa cabbage system in the lab with experimental communities mimicking various dispersal rates of LAB. Even at high dispersal rates, LAB became rare or completely undetectable in experimental communities, suggesting that they are also establishment limited. Collectively, our data demonstrate that the low abundance of LAB in phyllosphere communities may be explained by establishment limitation.

Original languageEnglish
Article numbere00269-19
JournalApplied and Environmental Microbiology
Volume85
Issue number13
DOIs
StatePublished - 2019

ASJC Scopus Subject Areas

  • Biotechnology
  • Food Science
  • Applied Microbiology and Biotechnology
  • Ecology

Keywords

  • 16S
  • Cabbage
  • Community assembly
  • Lactic acid bacteria
  • Microbiome
  • Phyllosphere

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