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Genome-scale spatial mapping of the Hodgkin lymphoma microenvironment identifies tumor cell survival factors

  • Vignesh Shanmugam
  • , Neriman Tokcan
  • , Daniel Chafamo
  • , Sean Sullivan
  • , Mehdi Borji
  • , Haley Martin
  • , Gail Newton
  • , Naeem Nadaf
  • , Saoirse Hanbury
  • , Irving Barrera
  • , Dylan Cable
  • , Jackson Weir
  • , Orr Ashenberg
  • , Geraldine Pinkus
  • , Scott Rodig
  • , Caroline Uhler
  • , Evan Macosko
  • , Margaret Shipp
  • , Abner Louissaint
  • , Fei Chen
  • Todd R. Golub
  • Broad Institute
  • Brigham and Women’s Hospital
  • Harvard University
  • University of Pennsylvania
  • The University of Chicago
  • Massachusetts General Hospital
  • University of Michigan, Ann Arbor
  • Massachusetts Institute of Technology
  • Dana-Farber Cancer Institute
  • Harvard University

Research output: Contribution to journalArticlepeer-review

Abstract

A central challenge in cancer research is to identify the secreted factors that sustain tumor cell survival. This is best exemplified in Hodgkin lymphoma, where malignant cells constitute a minor fraction of the tumor and rely on signals from the microenvironment for survival. Using genome-wide transcriptional profiling with spatial and single-cell resolution, we show that the neighborhood around malignant cells forms a distinct niche of 31 non-malignant cell types, enriched in helper T cells and myeloid cells, but depleted of plasma cells. Moreover, our spatial analysis nominates IL13 as a candidate survival factor. Recombinant IL13 augments malignant cell growth in vitro, and genome-wide loss-of-function screens across >1000 human cancer cell lines identify IL4R and IL13RA1, heterodimeric components of the IL13 receptor, as uniquely essential in Hodgkin lymphoma. Importantly, blocking antibodies phenocopy genetic inactivation. Our findings provide a biological rationale for testing IL13-directed therapies, which are already FDA-approved, in Hodgkin lymphoma.

Original languageEnglish
Article number838
JournalNature Communications
Volume17
Issue number1
DOIs
StatePublished - Dec 2026

ASJC Scopus Subject Areas

  • General Chemistry
  • General Biochemistry,Genetics and Molecular Biology
  • General
  • General Physics and Astronomy

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