Using Autoencoders to Explore the Conformational Space of the Cdc42 Protein

Fatemeh Afrasiabi; Ramin Dehghanpoor; Nurit Haspel

doi:10.1007/978-3-031-85435-4_4

Using Autoencoders to Explore the Conformational Space of the Cdc42 Protein

Fatemeh Afrasiabi
, Ramin Dehghanpoor
, Nurit Haspel

Computer Science

University of Massachusetts Boston

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Original language	English
Title of host publication	Computational Structural Bioinformatics - International Workshop, CSBW 2024, Proceedings
Editors	Nurit Haspel, Kevin Molloy
Publisher	Springer Science and Business Media Deutschland GmbH
Pages	45-57
Number of pages	13
ISBN (Print)	9783031854347
DOIs	https://doi.org/10.1007/978-3-031-85435-4_4
State	Published - 2025
Event	Computational Structural Bioinformatics Workshop, CMSB 2024 - Boston, United States Duration: Nov 16 2024 → Nov 16 2024

Publication series

Name	Communications in Computer and Information Science
Volume	2396 CCIS
ISSN (Print)	1865-0929
ISSN (Electronic)	1865-0937

Conference

Conference	Computational Structural Bioinformatics Workshop, CMSB 2024
Country/Territory	United States
City	Boston
Period	11/16/24 → 11/16/24

ASJC Scopus Subject Areas

General Computer Science
General Mathematics

Keywords

Autoencoders
Cdc42
MD simulations
Protein conformational search

Access to Document

10.1007/978-3-031-85435-4_4

Cite this

Afrasiabi, F., Dehghanpoor, R., & Haspel, N. (2025). Using Autoencoders to Explore the Conformational Space of the Cdc42 Protein. In N. Haspel, & K. Molloy (Eds.), Computational Structural Bioinformatics - International Workshop, CSBW 2024, Proceedings (pp. 45-57). (Communications in Computer and Information Science; Vol. 2396 CCIS). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-031-85435-4_4

Using Autoencoders to Explore the Conformational Space of the Cdc42 Protein. / Afrasiabi, Fatemeh; Dehghanpoor, Ramin; Haspel, Nurit.
Computational Structural Bioinformatics - International Workshop, CSBW 2024, Proceedings. ed. / Nurit Haspel; Kevin Molloy. Springer Science and Business Media Deutschland GmbH, 2025. p. 45-57 (Communications in Computer and Information Science; Vol. 2396 CCIS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Afrasiabi, F, Dehghanpoor, R & Haspel, N 2025, Using Autoencoders to Explore the Conformational Space of the Cdc42 Protein. in N Haspel & K Molloy (eds), Computational Structural Bioinformatics - International Workshop, CSBW 2024, Proceedings. Communications in Computer and Information Science, vol. 2396 CCIS, Springer Science and Business Media Deutschland GmbH, pp. 45-57, Computational Structural Bioinformatics Workshop, CMSB 2024, Boston, United States, 11/16/24. https://doi.org/10.1007/978-3-031-85435-4_4

Afrasiabi F, Dehghanpoor R, Haspel N. Using Autoencoders to Explore the Conformational Space of the Cdc42 Protein. In Haspel N, Molloy K, editors, Computational Structural Bioinformatics - International Workshop, CSBW 2024, Proceedings. Springer Science and Business Media Deutschland GmbH. 2025. p. 45-57. (Communications in Computer and Information Science). doi: 10.1007/978-3-031-85435-4_4

Afrasiabi, Fatemeh ; Dehghanpoor, Ramin ; Haspel, Nurit. / Using Autoencoders to Explore the Conformational Space of the Cdc42 Protein. Computational Structural Bioinformatics - International Workshop, CSBW 2024, Proceedings. editor / Nurit Haspel ; Kevin Molloy. Springer Science and Business Media Deutschland GmbH, 2025. pp. 45-57 (Communications in Computer and Information Science).

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